How to Deduct Employee's HSA Contributions from Their Paycheck?

When it comes to deducting an employee's HSA contributions from their paycheck, there are a few key steps to follow to ensure a smooth process for both the employer and the employee.

Here are the steps to deduct an employee's HSA contributions:

  1. Inform the employee: Before making any deductions, inform the employee about the process and obtain their consent.
  2. Set up payroll system: Ensure that your payroll system is equipped to handle HSA contributions deductions.
  3. Calculate the contribution amount: Determine the agreed-upon HSA contribution amount for the employee.
  4. Deduct from the paycheck: Deduct the specified HSA contribution amount from the employee's paycheck.
  5. Record keeping: Keep detailed records of the HSA contributions deducted for each pay period.
  6. Reporting: Include the HSA contributions deducted in the employee's pay stub and relevant tax forms.
  7. Compliance: Ensure that the HSA deductions comply with IRS regulations and contribution limits.

By following these steps, employers can seamlessly deduct employee's HSA contributions from their paycheck while ensuring compliance and transparency.


To successfully deduct an employee's HSA contributions from their paycheck, it's important to initiate the process with clear communication to the employee regarding their rights and benefits.

Download our FREE mobile app to get more of the following

Over 7,000+ HSA eligible items for sale.
Check on product HSA (Health Savings Account) eligibility
Get price update notifications
And more!

Did you find this page useful?

Subscribe to our Newsletter