How to Set Up HSA Deduction in Desktop QuickBooks

If you're looking to set up an HSA deduction in Desktop QuickBooks, you're in the right place. Setting up this deduction can help you manage your health savings account with ease and efficiency. Here's a step-by-step guide to help you navigate through the process.

Follow these easy steps to set up HSA deduction in Desktop QuickBooks:

  1. Open your QuickBooks Desktop software and go to the 'Employees' menu.
  2. Select 'Employee Center' and choose the employee for whom you want to set up the HSA deduction.
  3. Click on the 'Payroll Info' tab for the selected employee.
  4. Scroll down to the 'Deductions' section and click on 'New Deduction'.
  5. Choose 'Health Savings Account (HSA)' from the dropdown menu.
  6. Enter the deduction amount or percentage and select the frequency of the deduction (e.g., per paycheck).
  7. Save your changes and close the dialog box.
  8. Verify the setup by running a payroll check for the employee with the HSA deduction.
  9. Review the paycheck to ensure the deduction is calculated correctly.
  10. You have successfully set up HSA deduction in Desktop QuickBooks!

By following these steps, you can easily manage your HSA deductions in QuickBooks Desktop and keep track of your health savings with precision. If you encounter any issues during the setup process, don't hesitate to reach out to QuickBooks support for assistance.


Setting up an HSA deduction in Desktop QuickBooks isn’t just a smart move for your finances; it’s also a straightforward process that can save you time. Make sure to follow these steps attentively to ensure accurate deductions that will assist you in your health savings management.

Download our FREE mobile app to get more of the following

Over 7,000+ HSA eligible items for sale.
Check on product HSA (Health Savings Account) eligibility
Get price update notifications
And more!

Did you find this page useful?

Subscribe to our Newsletter